PACS1AlphaSilico
Research

Next steps and collaboration

Next steps and collaboration

Immediate validation priorities (weeks to months)

The single highest-value step is a retrospective cohort comparison at specialized PACS1 clinics — see page 10. We are actively reaching out to clinicians at CHU Montpellier (Pr Geneviève) and welcome contacts elsewhere.

Next steps in increasing complexity:

Step

Time

Estimated cost

Lab type

Retrospective cohort analysis

4–12 wk

~0 €

clinical (PACS1 specialist)

Thermal shift / SPR binding assay

4–8 wk

~5–15 k€

biochemistry

Cellular rescue assay (TGN46, COL8A1)

12–24 wk

~30–50 k€

cell biology

Molecular dynamics 100 ns × 3 (GPU)

1–2 wk

~0–500 €

computational

Pocket #1 stability MD + ligand docking

2–4 wk

~0–1 k€

computational

Cryo-EM or X-ray of bound complex

6–18 mo

~50–150 k€

structural biology

Prospective stratified clinical trial

years

≥ 500 k€

clinical trial

Collaboration calls

We invite contact from researchers and clinicians with:

  • PACS1 patient cohorts with documented mutation status and outcome data
  • Recombinant protein expertise — would your group purify PACS1-FBR (residues 100–280) for SPR/ITC binding studies?
  • Cell biology / iPSC-neurons — patient-derived lines for rescue assays
  • GPU resources for MD simulation
  • Medicinal chemistry interest in next-generation R203W-selective binders (the pharmacophore framework is on page 7)

Contact: [email protected] or via OSF project ed7sp.

What we will not do

For transparency:

  • We will not treat any individual patient based on this work. Recommendations belong with treating clinicians.
  • We will not issue press releases prematurely. The next milestone is the retrospective cohort result.
  • We will not make commercial claims. The drugs cited are FDA-approved with widely available generic versions.

Documents prepared for clinicians

A scientific note for Pr Geneviève (CHU Montpellier) summarizing the phenytoin hypothesis and proposing the retrospective analysis is available on OSF (Note_PACS1_Pr_Genevieve_v2.pdf). A 2-page family letter (Lettre_a_Julien_PACS1.docx) is also available for patients/families who wish to understand the work.